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If you want to use NTLM with Confluence and also allow anonymous access to Confluence, you will need to carefully consider which approach you use for authentication.
Regardless of the option you will need to enable anonymous access within Confluence (Confluence Admin -> Global Permissions).
With Configure Confluence to Use a Custom Authenticator and Tomcat + IIS you have two choices:
With this approach you simply send all anonymous users to the Tomcat port (e.g., 8080) and send all NTLM users to the IIS port. If someone uses the anonymous port and tries to access content that is not available to anonymous users, he/she will be presented with the Confluence login page. At that point they can enter their AD credentials, but this is not using NTLM (just AD integration).
With this approach everyone uses the IIS URL and the following is done:
Unfortunately, we are not providing the custom login-redirect page in IIS or the login.vm updates to you at this time. To track this, please see CSI-286
With Configure Confluence to Use a Custom Authenticator and JCIFS we haven't dug deep enough to understand how this would be done. There does not appear to be two ports/URLs that you can use, but JCIFS NTLM HTTP Authentication likely provides some clues.
We hope to provide more details here in the future. You can watch this page for updates or track this issue at CSI-287.